PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02070.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 382aa    MW: 42667.3 Da    PI: 5.1989
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02070.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.8e-161461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rgrWT+eEd++l  +++  G g+W++ ++  g++R++k+c++rw +yl
  Rsa1.0_02070.1_g00006.1 14 RGRWTAEEDQILSSYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWVNYL 61
                             8*********************************************97 PP

2Myb_DNA-binding53.84.5e-1767112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg+ T++E+el v+ +  lG++ W++Ia++++ gRt++++k++w+++l
  Rsa1.0_02070.1_g00006.1  67 RGNITPQEEELVVKMHSTLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
                              7999******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-21564IPR009057Homeodomain-like
PROSITE profilePS5129416.027961IPR017930Myb domain
SuperFamilySSF466897.34E-2811108IPR009057Homeodomain-like
SMARTSM007171.1E-111363IPR001005SANT/Myb domain
PfamPF002492.7E-141461IPR001005SANT/Myb domain
CDDcd001671.13E-81661No hitNo description
PROSITE profilePS5129425.19762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2465116IPR009057Homeodomain-like
SMARTSM007171.9E-1666114IPR001005SANT/Myb domain
PfamPF002495.0E-1567112IPR001005SANT/Myb domain
CDDcd001677.23E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGRAPCCEKV GIKRGRWTAE EDQILSSYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWVNY  60
LRSDLRRGNI TPQEEELVVK MHSTLGNRWS LIASHLPGRT DNEIKNYWNS HLSRKLHYIR  120
KSHDVPAVIM NAPPTSQRLP EKRRPGRTSR SAMKPKTHKP KTRKPKKTSA PPEVDANVAV  180
NAVVGEDALM MELSGAEAEL GPRDDYYYGA CHEGGDCCNT NNNNNNNNNN LMSINGEDAV  240
LSFDDDIIDL LLDESDPGNV FSLSDGDGEL SHLGDSTIAR GSSETSNLGY LDPLHEPCPS  300
VESFINYEHQ NALTDEFIDW DCVWQEGNKS HKLCHEKDSS DSMVSWLLDG DDETTIGKSN  360
CENFGEPLDH NEENALVAWL LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-221211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3171420.0HQ317142.1 Brassica rapa subsp. rapa cultivar Tsuda MYB domain protein 12 (MYB12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013699475.10.0PREDICTED: transcription factor MYB12-like
SwissprotO222641e-172MYB12_ARATH; Transcription factor MYB12
TrEMBLF2X1R90.0F2X1R9_BRARR; MYB domain protein 12
STRINGBra004456.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-158myb domain protein 12